Here you can configure profiles to use per transcoding http://138.201.86.173/VodTranscoding/en/vod-profile/, in future if want multiples outputs/rates per video, we can talk about.
On Video OnDemand -> Manage Videos http://138.201.86.173/VodTranscoding/en/admin/vod/ you can upload videos, there you choose the profile to encode this video. Also check/uncheck if want to upload to AWS. Use only upload, the other options are not suitable for this process, later I will remove them.